Detailed information of SNP:
|
SNP ID:
sf1117513974(Gbrowse)
Chromosome: chr11 Position: 17513974 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 60.77% | 39.23% |
| All Indica | 790 | 33.54% | 66.46% |
| All Japonica | 495 | 98.79% | 1.21% |
| Aus | 62 | 96.77% | 3.23% |
| Indica I | 373 | 21.72% | 78.28% |
| Indica II | 207 | 42.03% | 57.97% |
| Indica Intermediate | 210 | 46.19% | 53.81% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117513974 | C->T | INTERGENIC | None |