Detailed information of SNP:
|
SNP ID:
sf1117520803(Gbrowse)
Chromosome: chr11 Position: 17520803 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1355 | 97.20% | 2.80% |
| All Indica | 772 | 98.06% | 1.94% |
| All Japonica | 463 | 95.68% | 4.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 189 | 93.65% | 6.35% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 78 | 84.62% | 15.38% |
| Japonica Intermediate | 53 | 84.91% | 15.09% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117520803 | C->T | INTERGENIC | None |