Detailed information of SNP:
|
SNP ID:
sf1117530309(Gbrowse)
Chromosome: chr11 Position: 17530309 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 65.61% | 34.39% |
| All Indica | 798 | 91.60% | 8.40% |
| All Japonica | 496 | 20.16% | 79.84% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 86.63% | 13.37% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 93 | 50.54% | 49.46% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117530309 | A->G | LOC_Os11g30930(LOC_Os11g30930.1) | Synonymous |