Detailed information of SNP:
|
SNP ID:
sf1117531481(Gbrowse)
Chromosome: chr11 Position: 17531481 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 68.42% | 31.58% |
| All Indica | 791 | 56.76% | 43.24% |
| All Japonica | 496 | 81.65% | 18.35% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 369 | 40.92% | 59.08% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 209 | 61.24% | 38.76% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 53.76% | 46.24% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117531481 | A->T | INTERGENIC | None |