Detailed information of SNP:
|
SNP ID:
sf1117545887(Gbrowse)
Chromosome: chr11 Position: 17545887 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1368 | 90.35% | 9.65% |
| All Indica | 749 | 82.51% | 17.49% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 338 | 68.93% | 31.07% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 200 | 87.00% | 13.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117545887 | C->T | LOC_Os11g30960(LOC_Os11g30960.1) | Non-Synonymous SNP |