Detailed information of SNP:
|
SNP ID:
sf1117556042(Gbrowse)
Chromosome: chr11 Position: 17556042 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 83.19% | 16.81% |
| All Indica | 752 | 70.35% | 29.65% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 347 | 53.60% | 46.40% |
| Indica II | 208 | 93.27% | 6.73% |
| Indica Intermediate | 197 | 75.63% | 24.37% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117556042 | C->A | INTERGENIC | None |