Detailed information of SNP:
|
SNP ID:
sf1117557580(Gbrowse)
Chromosome: chr11 Position: 17557580 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 94.63% | 5.37% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 494 | 87.25% | 12.75% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 66.30% | 33.70% |
| Japonica Intermediate | 67 | 55.22% | 44.78% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117557580 | G->A | LOC_Os11g30990(LOC_Os11g30990.1) | Non-Synonymous SNP |