Detailed information of SNP:
|
SNP ID:
sf1117557677(Gbrowse)
Chromosome: chr11 Position: 17557677 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1365 | 88.94% | 11.06% |
| All Indica | 762 | 91.60% | 8.40% |
| All Japonica | 489 | 84.87% | 15.13% |
| Aus | 60 | 86.67% | 13.33% |
| Indica I | 361 | 94.18% | 5.82% |
| Indica II | 196 | 88.27% | 11.73% |
| Indica Intermediate | 205 | 90.24% | 9.76% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 63.04% | 36.96% |
| Japonica Intermediate | 64 | 42.19% | 57.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117557677 | C->T | LOC_Os11g30990(LOC_Os11g30990.1) | INTRON |