Detailed information of SNP:
|
SNP ID:
sf1117558623(Gbrowse)
Chromosome: chr11 Position: 17558623 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1339 | 93.13% | 6.87% |
| All Indica | 734 | 90.19% | 9.81% |
| All Japonica | 492 | 98.78% | 1.22% |
| Aus | 60 | 83.33% | 16.67% |
| Indica I | 343 | 90.38% | 9.62% |
| Indica II | 199 | 92.96% | 7.04% |
| Indica Intermediate | 192 | 86.98% | 13.02% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 96.67% | 3.33% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117558623 | G->A | LOC_Os11g30990(LOC_Os11g30990.1) | Synonymous |