Detailed information of SNP:
|
SNP ID:
sf1117559607(Gbrowse)
Chromosome: chr11 Position: 17559607 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 98.62% | 1.38% |
| All Indica | 797 | 99.87% | 0.13% |
| All Japonica | 459 | 96.08% | 3.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 306 | 94.44% | 5.56% |
| Tropical Japonica | 87 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117559607 | G->A | LOC_Os11g30990(LOC_Os11g30990.1) | Synonymous |