Detailed information of SNP:
|
SNP ID:
sf1117590512(Gbrowse)
Chromosome: chr11 Position: 17590512 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 92.73% | 7.27% |
| All Indica | 773 | 98.71% | 1.29% |
| All Japonica | 495 | 83.64% | 16.36% |
| Aus | 62 | 93.55% | 6.45% |
| Indica I | 370 | 98.11% | 1.89% |
| Indica II | 205 | 99.51% | 0.49% |
| Indica Intermediate | 198 | 98.99% | 1.01% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 67 | 44.78% | 55.22% |
| Group VI/Aromatic | 5 | 80.00% | 20.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117590512 | G->A | INTERGENIC | None |