Detailed information of SNP:
|
SNP ID:
sf1117620513(Gbrowse)
Chromosome: chr11 Position: 17620513 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 97.58% | 2.42% |
| All Indica | 789 | 97.08% | 2.92% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 62 | 93.55% | 6.45% |
| Indica I | 373 | 97.59% | 2.41% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 205 | 97.07% | 2.93% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117620513 | T->C | INTERGENIC | None |