Detailed information of SNP:
|
SNP ID:
sf1117625447(Gbrowse)
Chromosome: chr11 Position: 17625447 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 59.83% | 40.17% |
| All Indica | 799 | 81.98% | 18.02% |
| All Japonica | 497 | 19.11% | 80.89% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 83.20% | 16.80% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117625447 | T->C | INTERGENIC | None |