Detailed information of SNP:
|
SNP ID:
sf1117625850(Gbrowse)
Chromosome: chr11 Position: 17625850 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 57.01% | 42.99% |
| All Indica | 799 | 79.22% | 20.78% |
| All Japonica | 497 | 18.71% | 81.29% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 82.67% | 17.33% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 211 | 75.36% | 24.64% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117625850 | A->G | INTERGENIC | None |