Detailed information of SNP:
|
SNP ID:
sf1117631450(Gbrowse)
Chromosome: chr11 Position: 17631450 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1343 | 64.56% | 35.44% |
| All Indica | 788 | 84.26% | 15.74% |
| All Japonica | 433 | 23.09% | 76.91% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 369 | 84.01% | 15.99% |
| Indica II | 211 | 81.99% | 18.01% |
| Indica Intermediate | 208 | 87.02% | 12.98% |
| Temperate Japonica | 282 | 3.19% | 96.81% |
| Tropical Japonica | 86 | 54.65% | 45.35% |
| Japonica Intermediate | 65 | 67.69% | 32.31% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117631450 | T->G | LOC_Os11g31100(LOC_Os11g31100.1) | Synonymous |