Detailed information of SNP:
|
SNP ID:
sf1117662178(Gbrowse)
Chromosome: chr11 Position: 17662178 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 66.05% | 33.95% |
| All Indica | 796 | 85.80% | 14.20% |
| All Japonica | 497 | 29.78% | 70.22% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 373 | 86.06% | 13.94% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 76.67% | 23.33% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117662178 | T->G | LOC_Os11g31140(LOC_Os11g31140.1) | Non-Synonymous SNP |