Detailed information of SNP:
|
SNP ID:
sf1117662520(Gbrowse)
Chromosome: chr11 Position: 17662520 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 64.28% | 35.72% |
| All Indica | 796 | 85.55% | 14.45% |
| All Japonica | 496 | 29.44% | 70.56% |
| Aus | 64 | 53.12% | 46.88% |
| Indica I | 373 | 85.52% | 14.48% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 77.14% | 22.86% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117662520 | T->C | LOC_Os11g31140(LOC_Os11g31140.1) | INTRON |