Detailed information of SNP:
|
SNP ID:
sf1117677705(Gbrowse)
Chromosome: chr11 Position: 17677705 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1362 | 62.04% | 37.96% |
| All Indica | 794 | 55.29% | 44.71% |
| All Japonica | 449 | 79.96% | 20.04% |
| Aus | 66 | 16.67% | 83.33% |
| Indica I | 375 | 52.00% | 48.00% |
| Indica II | 209 | 77.99% | 22.01% |
| Indica Intermediate | 210 | 38.57% | 61.43% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 49 | 12.24% | 87.76% |
| Japonica Intermediate | 65 | 35.38% | 64.62% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117677705 | C->T | INTERGENIC | None |