Detailed information of SNP:
|
SNP ID:
sf1117686316(Gbrowse)
Chromosome: chr11 Position: 17686316 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 65.27% | 34.73% |
| All Indica | 771 | 86.90% | 13.10% |
| All Japonica | 489 | 25.97% | 74.03% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 369 | 84.28% | 15.72% |
| Indica II | 198 | 90.40% | 9.60% |
| Indica Intermediate | 204 | 88.24% | 11.76% |
| Temperate Japonica | 333 | 2.10% | 97.90% |
| Tropical Japonica | 88 | 82.95% | 17.05% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117686316 | T->C | LOC_Os11g31180(LOC_Os11g31180.1) | Non-Synonymous SNP |