Detailed information of SNP:
|
SNP ID:
sf1117704756(Gbrowse)
Chromosome: chr11 Position: 17704756 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 92.82% | 7.18% |
| All Indica | 787 | 94.66% | 5.34% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 370 | 99.19% | 0.81% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 204 | 83.33% | 16.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117704756 | G->A | INTERGENIC | None |