Detailed information of SNP:
|
SNP ID:
sf1117709821(Gbrowse)
Chromosome: chr11 Position: 17709821 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 61.55% | 38.45% |
| All Indica | 799 | 79.22% | 20.78% |
| All Japonica | 496 | 27.82% | 72.18% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 375 | 81.07% | 18.93% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 334 | 2.40% | 97.60% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117709821 | C->T | INTERGENIC | None |