Detailed information of SNP:
|
SNP ID:
sf1117711004(Gbrowse)
Chromosome: chr11 Position: 17711004 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 56.38% | 43.62% |
| All Indica | 788 | 72.34% | 27.66% |
| All Japonica | 493 | 25.35% | 74.65% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 370 | 70.27% | 29.73% |
| Indica II | 209 | 71.77% | 28.23% |
| Indica Intermediate | 209 | 76.56% | 23.44% |
| Temperate Japonica | 333 | 2.70% | 97.30% |
| Tropical Japonica | 92 | 84.78% | 15.22% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117711004 | G->C | INTERGENIC | None |