Detailed information of SNP:
|
SNP ID:
sf1117724716(Gbrowse)
Chromosome: chr11 Position: 17724716 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 58.61% | 41.39% |
| All Indica | 789 | 83.52% | 16.48% |
| All Japonica | 494 | 14.78% | 85.22% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 369 | 82.66% | 17.34% |
| Indica II | 209 | 89.95% | 10.05% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 334 | 4.49% | 95.51% |
| Tropical Japonica | 92 | 42.39% | 57.61% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 5 | 20.00% | 80.00% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117724716 | T->C | INTERGENIC | None |