Detailed information of SNP:
|
SNP ID:
sf1117739045(Gbrowse)
Chromosome: chr11 Position: 17739045 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1374 | 58.15% | 41.85% |
| All Indica | 764 | 40.45% | 59.55% |
| All Japonica | 492 | 89.63% | 10.37% |
| Aus | 63 | 22.22% | 77.78% |
| Indica I | 360 | 42.78% | 57.22% |
| Indica II | 203 | 35.96% | 64.04% |
| Indica Intermediate | 201 | 40.80% | 59.20% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 90 | 62.22% | 37.78% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117739045 | T->C | INTERGENIC | None |