Detailed information of SNP:
|
SNP ID:
sf1117752620(Gbrowse)
Chromosome: chr11 Position: 17752620 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1357 | 74.72% | 25.28% |
| All Indica | 750 | 58.00% | 42.00% |
| All Japonica | 486 | 96.71% | 3.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 347 | 58.50% | 41.50% |
| Indica II | 206 | 45.15% | 54.85% |
| Indica Intermediate | 197 | 70.56% | 29.44% |
| Temperate Japonica | 324 | 95.99% | 4.01% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117752620 | A->G | LOC_Os11g31240(LOC_Os11g31240.1) | INTRON |