Detailed information of SNP:
|
SNP ID:
sf1117762449(Gbrowse)
Chromosome: chr11 Position: 17762449 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 65.26% | 34.74% |
| All Indica | 788 | 83.88% | 16.12% |
| All Japonica | 487 | 29.36% | 70.64% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 373 | 83.65% | 16.35% |
| Indica II | 204 | 85.29% | 14.71% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 327 | 3.67% | 96.33% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 66 | 63.64% | 36.36% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117762449 | G->A | LOC_Os11g31250(LOC_Os11g31250.1) | INTRON |