Detailed information of SNP:
|
SNP ID:
sf1117777803(Gbrowse)
Chromosome: chr11 Position: 17777803 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 63.99% | 36.01% |
| All Indica | 790 | 83.04% | 16.96% |
| All Japonica | 496 | 28.02% | 71.98% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 83.47% | 16.53% |
| Indica II | 212 | 84.43% | 15.57% |
| Indica Intermediate | 203 | 80.79% | 19.21% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 67 | 59.70% | 40.30% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117777803 | A->C | INTERGENIC | None |