Detailed information of SNP:
|
SNP ID:
sf1117780680(Gbrowse)
Chromosome: chr11 Position: 17780680 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 91.38% | 8.62% |
| All Indica | 796 | 85.80% | 14.20% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 87.17% | 12.83% |
| Indica II | 212 | 77.83% | 22.17% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117780680 | G->A | INTERGENIC | None |