Detailed information of SNP:
|
SNP ID:
sf1117848319(Gbrowse)
Chromosome: chr11 Position: 17848319 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 67.21% | 32.79% |
| All Indica | 798 | 67.42% | 32.58% |
| All Japonica | 497 | 73.24% | 26.76% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 50.40% | 49.60% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 66.67% | 33.33% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117848319 | G->A | INTERGENIC | None |