Detailed information of SNP:
|
SNP ID:
sf1117848600(Gbrowse)
Chromosome: chr11 Position: 17848600 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 60.27% | 39.73% |
| All Indica | 793 | 57.25% | 42.75% |
| All Japonica | 497 | 71.83% | 28.17% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 374 | 46.52% | 53.48% |
| Indica II | 208 | 81.73% | 18.27% |
| Indica Intermediate | 211 | 52.13% | 47.87% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117848600 | T->C | LOC_Os11g31390(LOC_Os11g31390.1) | Synonymous |