Detailed information of SNP:
|
SNP ID:
sf1117849207(Gbrowse)
Chromosome: chr11 Position: 17849207 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 65.35% | 34.65% |
| All Indica | 797 | 83.56% | 16.44% |
| All Japonica | 497 | 29.58% | 70.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 82.93% | 17.07% |
| Indica II | 212 | 85.38% | 14.62% |
| Indica Intermediate | 210 | 82.86% | 17.14% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117849207 | A->G | LOC_Os11g31390(LOC_Os11g31390.1) | INTRON |