Detailed information of SNP:
|
SNP ID:
sf1117853931(Gbrowse)
Chromosome: chr11 Position: 17853931 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1382 | 72.21% | 27.79% |
| All Indica | 797 | 69.89% | 30.11% |
| All Japonica | 463 | 79.70% | 20.30% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 374 | 51.60% | 48.40% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 69 | 10.14% | 89.86% |
| Japonica Intermediate | 59 | 52.54% | 47.46% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117853931 | A->G | INTERGENIC | None |