Detailed information of SNP:
|
SNP ID:
sf1117865311(Gbrowse)
Chromosome: chr11 Position: 17865311 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 62.00% | 38.00% |
| All Indica | 793 | 81.97% | 18.03% |
| All Japonica | 497 | 28.17% | 71.83% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 371 | 81.94% | 18.06% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 209 | 82.78% | 17.22% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117865311 | C->T | LOC_Os11g31410(LOC_Os11g31410.1) | INTRON |