Detailed information of SNP:
|
SNP ID:
sf1117871486(Gbrowse)
Chromosome: chr11 Position: 17871486 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 54.36% | 45.64% |
| All Indica | 783 | 69.48% | 30.52% |
| All Japonica | 497 | 27.97% | 72.03% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 366 | 72.95% | 27.05% |
| Indica II | 211 | 63.03% | 36.97% |
| Indica Intermediate | 206 | 69.90% | 30.10% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117871486 | A->C | INTERGENIC | None |