Detailed information of SNP:
|
SNP ID:
sf1117878011(Gbrowse)
Chromosome: chr11 Position: 17878011 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 58.79% | 41.21% |
| All Indica | 786 | 73.41% | 26.59% |
| All Japonica | 496 | 28.63% | 71.37% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 74.93% | 25.07% |
| Indica II | 210 | 70.95% | 29.05% |
| Indica Intermediate | 205 | 73.17% | 26.83% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 62.69% | 37.31% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117878011 | T->C | INTERGENIC | None |