Detailed information of SNP:
|
SNP ID:
sf1117878615(Gbrowse)
Chromosome: chr11 Position: 17878615 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 59.01% | 40.99% |
| All Indica | 778 | 74.04% | 25.96% |
| All Japonica | 497 | 28.57% | 71.43% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 370 | 75.41% | 24.59% |
| Indica II | 205 | 70.24% | 29.76% |
| Indica Intermediate | 203 | 75.37% | 24.63% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117878615 | A->G | INTERGENIC | None |