Detailed information of SNP:
|
SNP ID:
sf1117880945(Gbrowse)
Chromosome: chr11 Position: 17880945 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 54.37% | 45.63% |
| All Indica | 777 | 66.54% | 33.46% |
| All Japonica | 497 | 28.17% | 71.83% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 70.24% | 29.76% |
| Indica II | 198 | 59.09% | 40.91% |
| Indica Intermediate | 206 | 66.99% | 33.01% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117880945 | A->G | INTERGENIC | None |