Detailed information of SNP:
|
SNP ID:
sf1117886810(Gbrowse)
Chromosome: chr11 Position: 17886810 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 61.39% | 38.61% |
| All Indica | 774 | 77.65% | 22.35% |
| All Japonica | 497 | 29.38% | 70.62% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 365 | 75.89% | 24.11% |
| Indica II | 205 | 80.00% | 20.00% |
| Indica Intermediate | 204 | 78.43% | 21.57% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 11 | 54.55% | 45.45% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117886810 | T->A | LOC_Os11g31430(LOC_Os11g31430.1) | INTRON |