Detailed information of SNP:
|
SNP ID:
sf1117898469(Gbrowse)
Chromosome: chr11 Position: 17898469 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 67.87% | 32.13% |
| All Indica | 794 | 52.39% | 47.61% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 373 | 42.36% | 57.64% |
| Indica II | 210 | 70.95% | 29.05% |
| Indica Intermediate | 211 | 51.66% | 48.34% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117898469 | T->C | INTERGENIC | None |