Detailed information of SNP:
|
SNP ID:
sf1117898969(Gbrowse)
Chromosome: chr11 Position: 17898969 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 69.26% | 30.74% |
| All Indica | 796 | 53.14% | 46.86% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 373 | 42.36% | 57.64% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 210 | 51.90% | 48.10% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117898969 | G->A | INTERGENIC | None |