Detailed information of SNP:
|
SNP ID:
sf1117901542(Gbrowse)
Chromosome: chr11 Position: 17901542 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 66.71% | 33.29% |
| All Indica | 793 | 52.96% | 47.04% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 373 | 41.29% | 58.71% |
| Indica II | 210 | 74.29% | 25.71% |
| Indica Intermediate | 210 | 52.38% | 47.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117901542 | C->T | INTERGENIC | None |