Detailed information of SNP:
|
SNP ID:
sf1117901877(Gbrowse)
Chromosome: chr11 Position: 17901877 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 66.60% | 33.40% |
| All Indica | 793 | 51.83% | 48.17% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 374 | 40.64% | 59.36% |
| Indica II | 208 | 71.63% | 28.37% |
| Indica Intermediate | 211 | 52.13% | 47.87% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117901877 | C->T | INTERGENIC | None |