Detailed information of SNP:
|
SNP ID:
sf1117912710(Gbrowse)
Chromosome: chr11 Position: 17912710 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1376 | 55.89% | 44.11% |
| All Indica | 759 | 68.77% | 31.23% |
| All Japonica | 497 | 28.77% | 71.23% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 364 | 71.70% | 28.30% |
| Indica II | 197 | 62.94% | 37.06% |
| Indica Intermediate | 198 | 69.19% | 30.81% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117912710 | C->A | LOC_Os11g31450(LOC_Os11g31450.1) | UTR_5_PRIME |