Detailed information of SNP:
|
SNP ID:
sf1117915582(Gbrowse)
Chromosome: chr11 Position: 17915582 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 67.44% | 32.56% |
| All Indica | 796 | 87.44% | 12.56% |
| All Japonica | 497 | 29.18% | 70.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 84.22% | 15.78% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 209 | 84.21% | 15.79% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117915582 | T->C | INTERGENIC | None |