Detailed information of SNP:
|
SNP ID:
sf1117930704(Gbrowse)
Chromosome: chr11 Position: 17930704 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1339 | 93.73% | 6.27% |
| All Indica | 727 | 89.41% | 10.59% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 350 | 92.57% | 7.43% |
| Indica II | 180 | 81.67% | 18.33% |
| Indica Intermediate | 197 | 90.86% | 9.14% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117930704 | T->G | LOC_Os11g31480(LOC_Os11g31480.1) | INTRON |