Detailed information of SNP:
|
SNP ID:
sf1117945868(Gbrowse)
Chromosome: chr11 Position: 17945868 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 88.68% | 11.32% |
| All Indica | 797 | 98.87% | 1.13% |
| All Japonica | 494 | 72.67% | 27.33% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 333 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 67 | 40.30% | 59.70% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117945868 | C->T | LOC_Os11g31500(LOC_Os11g31500.1) | Non-Synonymous SNP |