Detailed information of SNP:
|
SNP ID:
sf1117948780(Gbrowse)
Chromosome: chr11 Position: 17948780 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 55.74% | 44.26% |
| All Indica | 799 | 85.86% | 14.14% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 82.13% | 17.87% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117948780 | C->G | LOC_Os11g31500(LOC_Os11g31500.1) | INTRON |