Detailed information of SNP:
|
SNP ID:
sf1117981335(Gbrowse)
Chromosome: chr11 Position: 17981335 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 95.18% | 4.82% |
| All Indica | 794 | 95.84% | 4.16% |
| All Japonica | 496 | 96.37% | 3.63% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 207 | 88.89% | 11.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 81.72% | 18.28% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117981335 | G->A | INTERGENIC | None |