Detailed information of SNP:
|
SNP ID:
sf1117994633(Gbrowse)
Chromosome: chr11 Position: 17994633 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 56.46% | 43.54% |
| All Indica | 798 | 36.47% | 63.53% |
| All Japonica | 496 | 91.53% | 8.47% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 25.33% | 74.67% |
| Indica II | 213 | 52.58% | 47.42% |
| Indica Intermediate | 210 | 40.00% | 60.00% |
| Temperate Japonica | 335 | 89.85% | 10.15% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117994633 | C->T | INTERGENIC | None |