Detailed information of SNP:
|
SNP ID:
sf1117995327(Gbrowse)
Chromosome: chr11 Position: 17995327 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 75.95% | 24.05% |
| All Indica | 798 | 62.53% | 37.47% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 63 | 87.30% | 12.70% |
| Indica I | 375 | 67.73% | 32.27% |
| Indica II | 213 | 40.85% | 59.15% |
| Indica Intermediate | 210 | 75.24% | 24.76% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1117995327 | C->T | INTERGENIC | None |